Clinical RNA-seq Analysis Platform
End-to-end molecular classification from input data to report-ready findings.
Active Module
Select a module above to review its active workflow. HemaLigC unifies fusion detection, variant calling, lineage prediction, subtype classification, and report generation without changing any processing logic.
Pipeline Workflow
Model Performance Metrics
Research Disclaimer
Sample Input & Metadata
Load sample files, select modules, and configure the run without modifying processing logic.
Running Jobs
Track active analyses, progress states, and runtime logs in real time.
Old Jobs History
Completed runs. Browse results. Prepare reports.
| Fusion | Gene 5′ | Gene 3′ | In-frame | Callers | Reads |
|---|---|---|---|---|---|
| ETV6::RUNX1 | ETV6 chr12:12022903 | RUNX1 chr21:34859474 | Yes | 218 |
| Gene | HGVSc | HGVSp | Callers | VAF | Pathogenicity |
|---|---|---|---|---|---|
| NRAS | NM_002524.5:c.181C>A | p.Q61K |
34.6%
|
Oncogenic |
Clinical Report
Generate structured clinical summaries from analyzed samples.
Integrated Browser
Open genomic viewers and databases inline.
Project Notes
Keep analysis notes and observations organized by project.
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Technical Overview
Architecture, tools, and version information for HemaLigC.
Pipeline Settings
Configure Nextflow runtime, WSL paths, and execution parameters.